Package: BREADR
Title: Estimates Degrees of Relatedness (Up to the Second Degree) for
        Extreme Low-Coverage Data
Version: 1.0.4
Authors@R: 
    c(
    person(
      given = "Jono", 
      family = "Tuke", 
      email = "simon.tuke@adelaide.edu.au", 
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0002-1688-8951")
    ), 
    person(
      given = "Adam B.", 
      family = "Rohrlach",
      email = "adam.rohrlach@adelaide.edu.au", 
      role = "aut",
      comment = c(ORCID = "0000-0002-4204-5018")
    ), 
    person(
      given = "Wolfgang", 
      family = "Haak",
      email = "wolfgang_haak@eva.mpg.de", 
      role = "aut",
      comment = c(ORCID = "0000-0003-2475-2007")
    ), 
    person(
      given = "Divyaratan",
      family = "Popli",
      email = "divyaratan_popli@eva.mpg.de",
      role = "aut", 
      comment = c(ORCID = "0000-0002-0305-6427")
    )
    )
Description: The goal of the package is to provide an easy-to-use
        method for estimating degrees of relatedness (up to the second
        degree) for extreme low-coverage data. The package also allows
        users to quantify and visualise the level of confidence in the
        estimated degrees of relatedness.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/jonotuke/BREADR,
        https://jonotuke.github.io/BREADR/
BugReports: https://github.com/jonotuke/BREADR/issues
Suggests: spelling, knitr, rmarkdown, testthat (>= 3.0.0), Matrix, fs
Config/testthat/edition: 3
Imports: data.table, dplyr, forcats, ggplot2, ggpubr, ggstatsplot,
        grDevices, magrittr, MASS, matrixStats, purrr, readr, stringr,
        tibble, tidyr
Depends: R (>= 4.3)
LazyData: true
Language: en-US
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libgmp3-dev make libicu-dev libmpfr-dev
        pari-gp libx11-dev
Repository: https://jonotuke.r-universe.dev
Date/Publication: 2026-04-15 23:58:36 UTC
RemoteUrl: https://github.com/jonotuke/breadr
RemoteRef: HEAD
RemoteSha: ed27851c7af621cac76a8513e1a918ec04a74acd
NeedsCompilation: no
Packaged: 2026-07-15 08:46:57 UTC; root
Author: Jono Tuke [aut, cre] (ORCID: <https://orcid.org/0000-0002-1688-8951>),
  Adam B. Rohrlach [aut] (ORCID: <https://orcid.org/0000-0002-4204-5018>),
  Wolfgang Haak [aut] (ORCID: <https://orcid.org/0000-0003-2475-2007>),
  Divyaratan Popli [aut] (ORCID: <https://orcid.org/0000-0002-0305-6427>)
Maintainer: Jono Tuke <simon.tuke@adelaide.edu.au>